Difference between revisions of "Publications"
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| + | List of publications [[:Category:Publication]] | ||
| − | = | + | =Guidelines= |
| + | *https://www.nature.com/articles/nmeth.4532 | ||
| + | *http://blogs.nature.com/onyourwavelength/2018/07/18/heuristics-for-better-figures/ | ||
| − | [[Bryk et al. 2017|Bryk, J., Reeves, R. G., Reed, F. A., & Denton, J. A. (2017). Transcriptional effects of a positive feedback circuit in ''Drosophila melanogaster'']]. ''[[BMC Genomics]]'', 18(1), 990; https://doi.org/10.1186/s12864-017-4385-z | + | ==Illustrations== |
| + | *https://blogs.scientificamerican.com/sa-visual/visualizing-science-illustration-and-beyond/ | ||
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| + | =Reproducibility= | ||
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| + | https://www.npr.org/sections/health-shots/2018/08/27/642218377/in-psychology-and-other-social-sciences-many-studies-fail-the-reproducibility-te | ||
| + | |||
| + | =Resources= | ||
| + | |||
| + | https://orcid.org/ | ||
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| + | https://phys.org/biology-news/ | ||
| + | |||
| + | =List of Lab Publications= | ||
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| + | [[Bryk et al. 2017|Bryk, J., Reeves, R. G., Reed, F. A., & Denton, J. A. (2017). Transcriptional effects of a positive feedback circuit in ''Drosophila melanogaster'']]. ''[[BMC Genomics]]'', 18(1), 990; [https://doi.org/10.1186/s12864-017-4385-z] | ||
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| + | [[Milinski et al. 2008|Milinski, M., R. Sommerfeld, H.-J. Krambeck, F. A. Reed and J. Marotzke. (2008) The collective risk social dilemma, and the prevention of simulated dangerous climate change.]] ''[[Proceedings of the National Academy of Sciences USA]]'' 105: 2291-2294. [https://doi.org/10.1073/pnas.0709546105] | ||
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| + | [[Reed 2012|Reed, F. A. (2012). Modern Human Migrations: The First 200,000 Years]]. In ''[[Migrations: Interdisciplinary Perspectives]]'' (pp. 315-326). Springer, Vienna. | ||
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| + | [[Reed 2007|Reed, F. A. (2007) Two-locus epistasis with sexually antagonistic selection: A genetic Parrondo’s paradox.]] ''[[Genetics (Journal)|Genetics]]'' 176: 1923-1929. [https://doi.org/10.1534/genetics.106.069997] | ||
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| + | [[Reed 2008|Reed, F. A. (2008) Are Humans Still Evolving?]] In ''[[Encyclopedia of Life Sciences: Handbook of Human Molecular Evolution]]'', D. N. Cooper & H. Kehrer-Sawatzki, Eds., John Wiley & Sons, Ltd., Chichester, UK. http://www.els.net [https://doi.org/10.1002/9780470015902.a0020794] | ||
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| + | [[Traulsen and Reed 2012|Traulsen, A. and F. A. Reed. (2012) From genes to games: Cooperation and cyclic dominance of meiotic drive alleles.]] ''[[Journal of Theoretical Biology]]'' 299: 120-125. [https://doi.org/10.1016/j.jtbi.2011.04.032] | ||
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| + | [[Allaby et al. 2010|Allaby, R. G., F. R. Friedlaender, F. A. Reed, K. K. Kidd, J. R. Kidd, et al. (2010) Prehistoric Pacific Population Movements.]] pp. 143-157 in ''[[The Global Origins and Developments of Seafaring]]''. A. Anderson, J. H. Barrett & K. V. Boyle, Eds., ISBN: 978-1-902937-52-6, McDonald Institute for Archaeological Research, Cambridge, UK. | ||
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| + | [[Altrock et al. 2010|Altrock, P. M., A. Traulsen, R. G. Reeves, and F. A. Reed. (2010) Using underdominance to bi-stably transform local populations.]] ''[[Journal of Theoretical Biology]]'' 267: 62-75. doi:10.1016/j.jtbi.2010.08.004 | ||
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| + | [[Altrock et al. 2011|Altrock, P. M., A. Traulsen, and F. A. Reed. (2011) Stability Properties of Underdominance in Finite Subdivided Populations.]] ''[[PLoS Computational Biology]]'' 7: e1002260. doi:10.1371/journal.pcbi.1002260 | ||
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| + | [[Aquadro et al. 2001|Aquadro, C. F., V. L. Bauer DuMont and F. A. Reed. (2001) Genome-wide variation in the human and fruitfly: a comparison.]] ''[[Current Opinion in Genetics & Development]]'' 11: 627-634. doi:10.1016/S0959-437X(00)00245-8 | ||
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| + | [[Friedlaender et al. 2008|Friedlaender, J. S., F. R. Friedlaender, F. A. Reed, K. K. Kidd, J. R. Kidd, et al. (2008) The Genetic Structure of Pacific Islanders.]] ''[[PLoS Genetics]]'' 4: e19. doi:10.1371/journal.pgen.0040019 | ||
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| + | [[Gokhale et al. 2014|Gokhale, C., R. G. Reeves, and F. A. Reed. (2014) Dynamics of a combined medea-underdominant population transformation system.]] ''[[BMC Evolutionary Biology]]'' 14: 90. doi:10.1186/1471-2148-14-98 | ||
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| + | [[Gonder et al. 2007|Gonder, M. K., H. M. Mortensen, F. A. Reed, A. de Sousa and S. A. Tishkoff. (2007) Whole mtDNA Genome Sequence Analysis of Ancient African Lineages.]] ''[[Molecular Biology and Evolution]]'' 24: 757-768. doi:10.1093/molbev/msl209 | ||
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| + | [[Haubold et al. 2011|Haubold, B., F. A. Reed and P. Pfaffelhuber. (2011) Alignment-free estimation of nucleotide diversity.]] ''[[Bioinformatics]]'' 27: 449-455. doi:10.1093/bioinformatics/btq689 | ||
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| + | [[Kingston et al. 2018|Kingston, S. E., Martino, P., Melendy, M., Reed, F. A., & Carlon, D. B. (2018). Linking genotype to phenotype in a changing ocean: inferring the genomic architecture of a blue mussel stress response with genome‐wide association.]] ''[[Journal of Evolutionary Biology]]'', 31(3), 346-361. | ||
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| + | [[Kontanis and Reed 2006|Kontanis, E. J. and F. A. Reed. (2006) Evaluation of real-time PCR amplification effciencies to detect inhibitors.]] ''[[Journal of Forensic Sciences]]'' 51: 795-804. doi:10.1111/j.1556-4029.2006.00182.x | ||
[[Láruson 2017|Láruson, Á. J. (2017). Rates and relations of mitochondrial genome evolution across the Echinoidea, with special focus on the superfamily Odontophora]]. ''[[Ecology and Evolution]]'', 7(13), 4543-4551. https://doi.org/10.1002/ece3.3042 | [[Láruson 2017|Láruson, Á. J. (2017). Rates and relations of mitochondrial genome evolution across the Echinoidea, with special focus on the superfamily Odontophora]]. ''[[Ecology and Evolution]]'', 7(13), 4543-4551. https://doi.org/10.1002/ece3.3042 | ||
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[[Láruson & Reed 2016|Láruson, Á. J., & Reed, F. A. (2016). Stability of underdominant genetic polymorphisms in population networks]]. ''[[Journal of Theoretical Biology]]'', 390, 156-163; https://doi.org/10.1016/j.jtbi.2015.11.023 | [[Láruson & Reed 2016|Láruson, Á. J., & Reed, F. A. (2016). Stability of underdominant genetic polymorphisms in population networks]]. ''[[Journal of Theoretical Biology]]'', 390, 156-163; https://doi.org/10.1016/j.jtbi.2015.11.023 | ||
| − | [[ | + | [[Láruson et al. 2018|Láruson, Á. J., Coppard, S. E., Pespeni, M. H., & Reed, F. A. (2018). Gene expression across tissues, sex, and life stages in the sea urchin ''Tripneustes gratilla'' [Toxopneustidae, Odontophora, Camarodonta]]]. ''[[bioRxiv]]'', 284224; doi: https://doi.org/10.1101/284224 |
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| + | [[Reed 2004|Reed, F. A. (2004) ''Characterizing Diversity Reducing Selection in Humans and Fruitflies''.]] Ph.D. Dissertation, Cornell University, Ithaca, NY. http://wwwlib.umi.com/dissertations/fullcit/3149436 | ||
| − | + | [[Reed 2012|Reed, F. A. (2012). Modern Human Migrations: The First 200,000 Years]]. In ''[[Migrations: Interdisciplinary Perspectives]]'' (pp. 315-326). Springer, Vienna. | |
| − | + | [[Reed and Aquadro 2006|Reed, F. A. and C. F. Aquadro. (2006) Mutation, selection and the future of human evolution.]] ''[[Trends in Genetics]]'' 22: 479-484. doi:10.1016/j.tig.2006.07.005 | |
| − | + | [[Reed and Tishkoff 2006a|Reed, F. A. and S. A. Tishkoff. (2006) Positive selection can create false hotspots of recombination.]] ''[[Genetics]]'' 172: 2011-2014. doi:10.1534/genetics.105.052183 | |
| − | + | [[Reed and Tishkoff 2006b|Reed, F. A. and S. A. Tishkoff. (2006) African human diversity, origins and migrations.]] ''[[Current Opinion in Genetics & Development]]'' 16: 597-605. doi:10.1016/j.gde.2006.10.008 | |
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| + | [[Reed et al. 2003|Reed, F. A., E. J. Kontanis, K. A. R. Kennedy and C. F. Aquadro. (2003) Ancient DNA prospects from Sri Lankan highland dry caves support an emerging global pattern.]] ''[[American Journal of Physical Anthropology]]'' 121: 112-116. doi:10.1002/ajpa.10211 | ||
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| + | [[Reed et al. 2005a|Reed, F. A., J. M. Akey and C. F. Aquadro. (2005) Fitting background-selection predictions to levels of nucleotide variation and divergence along the human autosomes.]] ''[[Genome Research]]'' 15: 1211-1221. doi:10.1101/gr.3413205 | ||
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| + | [[Reed et al. 2005b|Reed, F. A., R. G. Reeves and C. F. Aquadro. (2005) Evidence of susceptibility and resistance to cryptic X-linked meiotic drive in natural populations of Drosophila melanogaster.]] ''[[Evolution (journal)|Evolution]]'' 59: 1280-1291. doi:10.1111/j.0014-3820.2005.tb01778.x | ||
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| + | [[Reed et al. 2013|Reed, F. A., A. Traulsen, P. M. Altrock (2013) Underdominance.]] In ''[[Encyclopedia of Genetics]]'' S. Brenner & J. H. Miller Eds., Elsevier Science Inc. doi:10.1016/B978-0-12-374984-0.01601-6 | ||
| − | + | [[Reeves et al. 2012|Reeves, R. G., J. Denton, F. Santucci, J. Bryk, and F. A. Reed. (2012) Scientific Standards and the Regulation of Genetically Modified Insects.]] ''[[PLoS Neglected Tropical Diseases]]'' 6: e1502. doi:10.1371/journal.pntd.0001502 | |
| − | Reeves, R. G., J. | + | [[Reeves et al. 2014|Reeves, R. G., J. Bryk, P. M. Altrock, J. Denton, and F. A. Reed. (2014) First Steps towards Underdominant Genetic Transformation of Insect Populations.]] ''[[PLoS ONE]]'' 9: e97557. doi:10.1371/journal.pone.0097557 |
| − | + | [[Shafer et al. 2015|Shafer, A. B. A., J. B. W. Wolf, P. C. Alves, L. Bergström, M. W. Bruford, I. Brännström, et al. (2015) Genomics and the challenging translation into conservation practice.]] ''[[Trends in Ecology & Evolution]]'' 30 (2), 78-87. doi:10.1016/j.tree.2014.11.009 | |
| − | + | [[Shafer et al. 2016|Shafer, A., JBW Wolf, PC Alves, L Bergström, G Colling, L Dalén, et al. (2016) Reply to Garner et al.]] ''[[Trends in Ecology & Evolution]]'' 31 (2), 83-84. doi:10.1016/j.tree.2015.11.010 | |
| − | + | [[Stemshorn et al. 2011|Stemshorn, K. C., F. A. Reed, A. W. Nolte, and D. Tautz. (2011) Rapid formation of distinct hybrid lineages after secondary contact of two fish species (Cottus sp.).]] ''[[Molecular Ecology]]'' 20: 1475-1491. doi:10.1111/j.1365-294X.2010.04997.x | |
| − | [[ | + | [[Tabios et al. 2014|Tabios, M., L. Boell, and F. A. Reed. (2014) A new mutation of PDA synthase, sepia, isolated from wild Drosophila melanogaster.]] ''[[Drosophila Information Service]]'' 97: 176-177. |
| + | http://www.ou.edu/journals/dis/DIS97/Tabios%20176.pdf | ||
| − | + | [[Tishkoff et al. 2007|Tishkoff, S. A., F. A. Reed, A. Ranciaro, B. F. Voight, C. C. Babbitt, et al. (2007) Convergent adaptation of human lactase persistence in Africa and Europe.]] ''[[Nature Genetics]]'' 39: 31-40. doi:10.1038/ng1946 | |
| − | + | [[Tishkoff et al. 2008|Tishkoff, S. A., M. K. Gonder, B. M. Henn, H. M. Mortensen, N. Fernandopulle, et al. (2007) History of click-speaking populations of Africa inferred from mtDNA and Y chromosome genetic variation.]] ''[[Molecular Biology and Evolution]]'' 24: 2180-2195. doi:10.1093/molbev/msm155 | |
| − | [[ | + | [[Tishkoff et al. 2009|Tishkoff, S. A., F. A. Reed, F. R. Friedlaender, C. Ehret, A. Ranciaro, et al. (2009) The Genetic Structure and History of Africans and African Americans.]] ''[[Science]]'' 324: 1035-1044. doi:10.1126/science.1172257 |
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=What Links Here= | =What Links Here= | ||
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Latest revision as of 08:30, 27 October 2018
List of publications Category:Publication
Contents
Guidelines
- https://www.nature.com/articles/nmeth.4532
- http://blogs.nature.com/onyourwavelength/2018/07/18/heuristics-for-better-figures/
Illustrations
Reproducibility
Resources
https://phys.org/biology-news/
List of Lab Publications
Bryk, J., Reeves, R. G., Reed, F. A., & Denton, J. A. (2017). Transcriptional effects of a positive feedback circuit in Drosophila melanogaster. BMC Genomics, 18(1), 990; [1]
Milinski, M., R. Sommerfeld, H.-J. Krambeck, F. A. Reed and J. Marotzke. (2008) The collective risk social dilemma, and the prevention of simulated dangerous climate change. Proceedings of the National Academy of Sciences USA 105: 2291-2294. [2]
Reed, F. A. (2012). Modern Human Migrations: The First 200,000 Years. In Migrations: Interdisciplinary Perspectives (pp. 315-326). Springer, Vienna.
Reed, F. A. (2007) Two-locus epistasis with sexually antagonistic selection: A genetic Parrondo’s paradox. Genetics 176: 1923-1929. [3]
Reed, F. A. (2008) Are Humans Still Evolving? In Encyclopedia of Life Sciences: Handbook of Human Molecular Evolution, D. N. Cooper & H. Kehrer-Sawatzki, Eds., John Wiley & Sons, Ltd., Chichester, UK. http://www.els.net [4]
Traulsen, A. and F. A. Reed. (2012) From genes to games: Cooperation and cyclic dominance of meiotic drive alleles. Journal of Theoretical Biology 299: 120-125. [5]
