Hawaiʻi Reed Lab Publications

Feng, X., Kambic, L., Nishimoto, J. H., Reed, F. A., Denton, J. A., Sutton, J. T., & Gantz, V. M. (2021).
Evaluation of Gene Knockouts by CRISPR as Potential Targets for the Genetic Engineering of Culex quinquefasciatus.
The CRISPR Journal 4(4).
https://doi.org/10.1089/crispr.2021.0028
Costantini, M. S., Medeiros, M. C., Crampton, L. H., & Reed, F. A. (2021). Wild gut microbiomes reveal individuals, species, and location as drivers of variation in two critically endangered tropical birds.
bioRxiv preprint 2021.05.28.446199
doi: https://doi.org/10.1101/2021.05.28.446199
Láruson, Á. J., & Reed, F. A. (2021).
Population Genetics with R: An Introduction for Life Scientists.
Oxford University Press, New York. ISBN 978-0-19-882954-6
https://global.oup.com/academic/product/population-genetics-with-r-9780198829546
Denton, J. A., Velasque, M., & Reed, F. A. (2021).
Cross-species Transcriptomic Network Analysis Reveals Links Between Ribosomal Protein Mutation and Cancer.
bioRxiv preprint 2020.12.11.420604.
https://doi.org/10.1101/2020.12.11.420604
Reed, F. A., & de Couet, H. G. (2021).
Oncofly: A CURE for Cancer.
bioRxiv preprint 2021.01.07.425757.
https://doi.org/10.1101/2021.01.07.425757.
Babiker, H., Jeffrey, H., Reed, F. A., Schiffels, S., Gray, R. D. (2020).
Striking Genetic Diversity Among Populations of West Africa Uncovers the Mystery of a Language Isolate.
SSRN preprint.
http://dx.doi.org/10.2139/ssrn.3631471
Láruson, Á. J., Coppard, S. E., Pespeni, M. H., & Reed, F. A. (2018).
Gene expression across tissues, sex, and life stages in the sea urchin Tripneustes gratilla [Toxopneustidae, Odontophora, Camarodonta].
Marine Genomics, 41, 12-18.
https://doi.org/10.1016/j.margen.2018.07.002
Reed, F. A., Aquino-Michaels, T. G., Costantini, M. S., Láruson, Á. J., & Sutton, J. T. (2018).
RPM-Drive: A robust, safe, and reversible gene drive system that remains functional after 200+ generations.
arXiv preprint arXiv:1806.05304 [q-bio.PE].
https://arxiv.org/abs/1806.05304
Kingston, S. E., Martino, P., Melendy, M., Reed, F. A., & Carlon, D. B. (2018).
Linking genotype to phenotype in a changing ocean: inferring the genomic architecture of a blue mussel stress response with genome-wide association.
Journal of Evolutionary Biology, 31(3), 346-361.
https://doi.org/10.1111/jeb.13224
Bryk, J., Reeves, R. G., Reed, F. A., & Denton, J. A. (2017).
Transcriptional effects of a positive feedback circuit in Drosophila melanogaster.
BMC Genomics, 18(1), 1-14.
https://doi.org/10.1186/s12864-017-4385-z
Láruson, Á. J. (2017).
Rates and relations of mitochondrial genome evolution across the Echinoidea, with special focus on the superfamily Odontophora.
Ecology and Evolution, 7(13), 4543-4551.
https://doi.org/10.1002/ece3.3042
Reed, F. A. (2017).
Evolutionary genetic engineering in the Indo-Pacific: Conservation, humanitarian, and social issues.
arXiv preprint arXiv:1706.01710 [q-bio.PE].
https://arxiv.org/abs/1706.01710
Reed, F. A. (2017).
CRISPR/Cas9 gene drive: Growing pains for a new technology.
Genetics, 205(3), 1037-1039.
https://doi.org/10.1534/genetics.116.198887
Láruson, Á. J., & Reed, F. A. (2016).
Stability of underdominant genetic polymorphisms in population networks.
Journal of Theoretical Biology, 390, 156-163.
https://doi.org/10.1016/j.jtbi.2015.11.023
Shafer, A. B., Wolf, J. B., Alves, P. C., Bergström, L., Colling, G., Dalén, L., ... & Zieliński, P. (2016).
Reply to Garner et al.
Trends in Ecology & Evolution, 31(2), 83-84.
https://doi.org/10.1016/j.tree.2015.11.010
Reeves, G., & Reed, F. (2015).
Stable transformation of a population and a method of biocontainment using haploinsufficiency and underdominance principles.
U.S. Patent Application No. 14/654,450.
https://patents.google.com/patent/US20150373937A1
Shafer, A. B., Wolf, J. B., Alves, P. C., Bergström, L., Bruford, M. W., Brännström, I., ... & Zieliński, P. (2015).
Genomics and the challenging translation into conservation practice.
Trends in Ecology & Evolution, 30(2), 78-87.
https://doi.org/10.1016/j.tree.2014.11.009
Gokhale, C. S., Reeves, R. G., & Reed, F. A. (2014).
Dynamics of a combined medea-underdominant population transformation system.
BMC Evolutionary Biology, 14(1), 1-9.
https://doi.org/10.1186/1471-2148-14-98
Tabios, M., Boell, L., and Reed, F. A. (2014).
A new mutation of PDA synthase, sepia, isolated from wild Drosophila melanogaster.
Drosophila Information Service 97, 176-177.
http://www.ou.edu/journals/dis/DIS97/Tabios%20176.pdf
Reeves, R. G., Bryk, J., Altrock, P. M., Denton, J. A., & Reed, F. A. (2014).
First steps towards underdominant genetic transformation of insect populations.
PLoS One, 9(5), e97557.
https://doi.org/10.1371/journal.pone.0097557
Reed, F. A., Traulsen, A., & Altrock, P. M. (2013).
Underdominance.
In S. Maloy, & K. Hughes (Eds.), Brenner's Encyclopedia of Genetics (2nd ed., pp. 247-249). Elsevier, Amsterdam. ISBN 978-0-08-096156-9.
https://www.sciencedirect.com/referencework/9780080961569/brenners-encyclopedia-of-genetics
Traulsen, A., & Reed, F. A. (2012).
From genes to games: cooperation and cyclic dominance in meiotic drive.
Journal of Theoretical Biology, 299, 120-125.
https://doi.org/10.1016/j.jtbi.2011.04.032
Reeves, R. G., Denton, J. A., Santucci, F., Bryk, J., & Reed, F. A. (2012).
Scientific standards and the regulation of genetically modified insects.
PLoS Neglected Tropical Diseases, 6(1), e1502.
https://doi.org/10.1371/journal.pntd.0001502
Reed, F. A. (2012).
Modern Human Migrations: The First 200,000 Years.
In M. Messer, R. Schroeder, & R. Wodak (Eds.) Migrations: Interdisciplinary Perspectives (pp. 315-326). Springer, Vienna. ISBN 978-3-7091-0949-6.
https://doi.org/10.1007/978-3-7091-0950-2
Altrock, P. M., Traulsen, A., & Reed, F. A. (2011).
Stability properties of underdominance in finite subdivided populations.
PLoS Computational Biology, 7(11), e1002260.
https://doi.org/10.1371/journal.pcbi.1002260

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May 17, 2021 – September 5, 2021